3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12833

Details:

PFam ID : PF12833

PFam Domain Description : Helix-turn-helix domain

Number of Sequence in 50% Dataset : 1482

Number of Sequence in Full Dataset : 16695

Average sequence length: 79.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12833	Q51600_BURCE_1_51	97.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12833	A3Y9S1_9GAMM_186_240	100

Sequence based PCA Plot of the family - PF12833 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=11
Motif2 Start=84 Length=8
Motif3 Start=50 Length=8
Motif4 Start=100 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay