3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12832

Details:

PFam ID : PF12832

PFam Domain Description : MFS_1 like family

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 202

Average sequence length: 74.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12832	A6FD89_9GAMM_7_83	61.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12832	C3RMN4_9FIRM_8_90	90.5

Sequence based PCA Plot of the family - PF12832 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=39 Length=8
Motif2 Start=30 Length=8
Motif3 Start=6 Length=8
Motif4 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay