3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12831

Details:

PFam ID : PF12831

PFam Domain Description : FAD dependent oxidoreductase

Number of Sequence in 50% Dataset : 382

Number of Sequence in Full Dataset : 1310

Average sequence length: 242.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12831	Q09D56_STIAD_13_338	84.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12831	A6FP59_9RHOB_5_217	100

Sequence based PCA Plot of the family - PF12831 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=402 Length=8
Motif2 Start=527 Length=8
Motif3 Start=1 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay