3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12819

Details:

PFam ID : PF12819

PFam Domain Description : Carbohydrate-binding protein of the ER

Number of Sequence in 50% Dataset : 165

Number of Sequence in Full Dataset : 527

Average sequence length: 272.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12819	E9M5Q9_9GAMA_248_532	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12819	A9TJL8_PHYPA_123_221	99.0

Sequence based PCA Plot of the family - PF12819 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=44 Length=8
Motif3 Start=10 Length=8
Motif4 Start=67 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay