3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12816

Details:

PFam ID : PF12816

PFam Domain Description : Golgi CORVET complex core vacuolar protein 8

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 137

Average sequence length: 181.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12816	B3RS88_TRIAD_578_678	90.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12816	Q4PAF4_USTMA_533_787	100

Sequence based PCA Plot of the family - PF12816 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=120 Length=8
Motif2 Start=4 Length=21
Motif3 Start=165 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay