3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12814

Details:

PFam ID : PF12814

PFam Domain Description : Meiotic cell cortex C-terminal pleckstrin homology

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 122

Average sequence length: 118.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12814	D0MVI5_PHYIT_786_909	71.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12814	C9ZJJ8_TRYB9_353_470	100

Sequence based PCA Plot of the family - PF12814 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=94 Length=8
Motif3 Start=12 Length=8
Motif4 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay