3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12813

Details:

PFam ID : PF12813

PFam Domain Description : XPG domain containing

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 92

Average sequence length: 226.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12813	A7S0X2_NEMVE_109_368	91.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12813	C0S8G9_PARBP_159_447	100

Sequence based PCA Plot of the family - PF12813 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=222 Length=8
Motif3 Start=26 Length=8
Motif4 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay