3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12811

Details:

PFam ID : PF12811

PFam Domain Description : Bax inhibitor 1 like

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 205

Average sequence length: 251.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12811	D7B6X7_NOCDD_2_306	79.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12811	D7B6X7_NOCDD_2_306	96.0

Sequence based PCA Plot of the family - PF12811 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=54 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay