3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12810

Details:

PFam ID : PF12810

PFam Domain Description : Glycine rich protein

Number of Sequence in 50% Dataset : 167

Number of Sequence in Full Dataset : 507

Average sequence length: 226.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12810	E2LIP4_MONPE_188_239	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12810	C9J8A8_HUMAN_110_200	97.2

Sequence based PCA Plot of the family - PF12810 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=45 Length=8
Motif2 Start=67 Length=8
Motif3 Start=27 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay