3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12809

Details:

PFam ID : PF12809

PFam Domain Description : Eukaryotic metallothionein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 3

Average sequence length: 49.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12809	E2LIP4_MONPE_188_239	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12809	E2LIP4_MONPE_188_239	85

Sequence based PCA Plot of the family - PF12809 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay