3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12807

Details:

PFam ID : PF12807

PFam Domain Description : Translation initiation factor eIF3 subunit 135

Number of Sequence in 50% Dataset : 98

Number of Sequence in Full Dataset : 223

Average sequence length: 177.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12807	A2DSW9_TRIVA_306_471	96.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12807	TIF31_KLULA_638_889	100

Sequence based PCA Plot of the family - PF12807 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=46 Length=8
Motif2 Start=15 Length=11
Motif3 Start=164 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay