3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12806

Details:

PFam ID : PF12806

PFam Domain Description : Acetyl-CoA dehydrogenase C-terminal like

Number of Sequence in 50% Dataset : 160

Number of Sequence in Full Dataset : 808

Average sequence length: 126.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12806	B3TCP1_9BACT_463_541	82.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12806	A3YFU6_9GAMM_532_696	100

Sequence based PCA Plot of the family - PF12806 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=32 Length=8
Motif4 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay