3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12804

Details:

PFam ID : PF12804

PFam Domain Description : MobA-like NTP transferase domain

Number of Sequence in 50% Dataset : 1073

Number of Sequence in Full Dataset : 3652

Average sequence length: 196.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12804	A4C7G5_9GAMM_10_272	86.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12804	A3ZU02_9PLAN_20_233	99.8

Sequence based PCA Plot of the family - PF12804 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=214 Length=8
Motif2 Start=266 Length=8
Motif3 Start=130 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay