3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12802

Details:

PFam ID : PF12802

PFam Domain Description : MarR family

Number of Sequence in 50% Dataset : 775

Number of Sequence in Full Dataset : 4235

Average sequence length: 60.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12802	A2F2G3_TRIVA_493_548	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12802	E8T0T4_GEOS2_6_96	100

Sequence based PCA Plot of the family - PF12802 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=47 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay