3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12800

Details:

PFam ID : PF12800

PFam Domain Description : 4Fe-4S binding domain

Number of Sequence in 50% Dataset : 229

Number of Sequence in Full Dataset : 613

Average sequence length: 19.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12800	A2F2G3_TRIVA_493_548	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12800	A8AA31_IGNH4_316_333	64

Sequence based PCA Plot of the family - PF12800 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay