3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12799

Details:

PFam ID : PF12799

PFam Domain Description : Leucine Rich repeats (2 copies)

Number of Sequence in 50% Dataset : 157

Number of Sequence in Full Dataset : 7889

Average sequence length: 44.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12799	A2F2G3_TRIVA_493_548	66.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12799	C4L8C1_TOLAT_22_98	99.6

Sequence based PCA Plot of the family - PF12799 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=11 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay