3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12798

Details:

PFam ID : PF12798

PFam Domain Description : 4Fe-4S binding domain

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 186

Average sequence length: 19.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12798	A3EMI9_VIBCH_420_434	65.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12798	A6UWC1_META3_50_64	67

Sequence based PCA Plot of the family - PF12798 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay