3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12797

Details:

PFam ID : PF12797

PFam Domain Description : 4Fe-4S binding domain

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 177

Average sequence length: 26.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12797	B0MNY4_9FIRM_2_23	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12797	A9F2P7_SORC5_335_356	98.2

Sequence based PCA Plot of the family - PF12797 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay