3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12796

Details:

PFam ID : PF12796

PFam Domain Description : Ankyrin repeats (3 copies)

Number of Sequence in 50% Dataset : 14010

Number of Sequence in Full Dataset : 44552

Average sequence length: 89.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12796	E8LH83_9GAMM_38_254	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12796	C6HBB2_AJECH_85_211	99.7

Sequence based PCA Plot of the family - PF12796 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=234 Length=8
Motif3 Start=16 Length=8
Motif4 Start=218 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay