3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12794

Details:

PFam ID : PF12794

PFam Domain Description : Mechanosensitive ion channel inner membrane domain 1

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 155

Average sequence length: 319.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12794	A1SUV5_PSYIN_485_825	92

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12794	E1SPQ4_FERBD_427_776	100

Sequence based PCA Plot of the family - PF12794 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=259 Length=8
Motif3 Start=220 Length=8
Motif4 Start=108 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay