3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12792

Details:

PFam ID : PF12792

PFam Domain Description : CSS motif domain associated with EAL

Number of Sequence in 50% Dataset : 132

Number of Sequence in Full Dataset : 304

Average sequence length: 198.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12792	A0Y0S8_9GAMM_32_247	96.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12792	A8AKK1_CITK8_38_219	99.3

Sequence based PCA Plot of the family - PF12792 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=67 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay