3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12791

Details:

PFam ID : PF12791

PFam Domain Description : Anti-sigma factor N-terminus

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 104

Average sequence length: 55.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12791	D3AB23_9CLOT_7_61	32.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12791	C8WQH5_ALIAD_12_68	100

Sequence based PCA Plot of the family - PF12791 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay