3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12790

Details:

PFam ID : PF12790

PFam Domain Description : Type VI secretion lipoprotein

Number of Sequence in 50% Dataset : 109

Number of Sequence in Full Dataset : 304

Average sequence length: 145.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12790	C4HWM9_YERPE_41_88	53.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12790	E1VJ05_9GAMM_23_246	100

Sequence based PCA Plot of the family - PF12790 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=30 Length=11
Motif3 Start=1 Length=8
Motif4 Start=99 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay