3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12788

Details:

PFam ID : PF12788

PFam Domain Description : YmaF family

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 46

Average sequence length: 86.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12788	A4J8M2_DESRM_65_158	73.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12788	A4J8M2_DESRM_65_158	100

Sequence based PCA Plot of the family - PF12788 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=63 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay