3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12785

Details:

PFam ID : PF12785

PFam Domain Description : Variant erythrocyte surface antigen-1

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 179

Average sequence length: 267.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12785	A7ASP6_BABBO_4_291	63.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12785	A7AMB0_BABBO_27_250	99.4

Sequence based PCA Plot of the family - PF12785 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=11
Motif2 Start=90 Length=8
Motif3 Start=14 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay