3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12783

Details:

PFam ID : PF12783

PFam Domain Description : Guanine nucleotide exchange factor in Golgi transport N-terminal

Number of Sequence in 50% Dataset : 99

Number of Sequence in Full Dataset : 395

Average sequence length: 148.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12783	D2VV06_NAEGR_260_418	78.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12783	A8NG37_COPC7_333_529	100

Sequence based PCA Plot of the family - PF12783 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=35 Length=8
Motif3 Start=11 Length=8
Motif4 Start=156 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay