3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12782

Details:

PFam ID : PF12782

PFam Domain Description : Invertebrate innate immunity transcript family

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 36

Average sequence length: 112.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12782	Q3LS82_STRPU_51_200	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12782	Q3LS87_STRPU_242_294	100

Sequence based PCA Plot of the family - PF12782 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=45 Length=8
Motif2 Start=138 Length=8
Motif3 Start=62 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay