3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12781

Details:

PFam ID : PF12781

PFam Domain Description : ATP-binding dynein motor region D5

Number of Sequence in 50% Dataset : 99

Number of Sequence in Full Dataset : 663

Average sequence length: 209.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12781	E9ID44_SOLIN_1_65	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12781	D7FYU7_ECTSI_3019_3272	100

Sequence based PCA Plot of the family - PF12781 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=195 Length=8
Motif2 Start=206 Length=8
Motif3 Start=9 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay