3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12779

Details:

PFam ID : PF12779

PFam Domain Description : YXWGXW repeat (2 copies)

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 265

Average sequence length: 23.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12779	D5W4P6_BURSC_78_89	91.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12779	E3AP66_9SPHI_46_84	70

Sequence based PCA Plot of the family - PF12779 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay