3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12777

Details:

PFam ID : PF12777

PFam Domain Description : Microtubule-binding stalk of dynein motor

Number of Sequence in 50% Dataset : 207

Number of Sequence in Full Dataset : 783

Average sequence length: 309.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12777	D7PRA3_ICHAL_1_49	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12777	C3ZKM4_BRAFL_3651_4016	100

Sequence based PCA Plot of the family - PF12777 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=33 Length=8
Motif4 Start=130 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay