3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12776

Details:

PFam ID : PF12776

PFam Domain Description : Myb/SANT-like DNA-binding domain

Number of Sequence in 50% Dataset : 101

Number of Sequence in Full Dataset : 345

Average sequence length: 89.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12776	D7PRA3_ICHAL_1_49	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12776	D7LA75_ARALL_167_266	100

Sequence based PCA Plot of the family - PF12776 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=76 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay