3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12774

Details:

PFam ID : PF12774

PFam Domain Description : Hydrolytic ATP binding site of dynein motor region D1

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 529

Average sequence length: 198.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12774	D7PRA3_ICHAL_1_49	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12774	B3L9A2_PLAKH_2278_2403	100

Sequence based PCA Plot of the family - PF12774 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=199 Length=8
Motif2 Start=160 Length=8
Motif3 Start=56 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay