3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12773

Details:

PFam ID : PF12773

PFam Domain Description : Double zinc ribbon

Number of Sequence in 50% Dataset : 242

Number of Sequence in Full Dataset : 612

Average sequence length: 51.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12773	D7PRA3_ICHAL_1_49	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12773	Q5L227_GEOKA_74_125	100

Sequence based PCA Plot of the family - PF12773 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=8
Motif2 Start=12 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay