3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12770

Details:

PFam ID : PF12770

PFam Domain Description : CHAT domain

Number of Sequence in 50% Dataset : 610

Number of Sequence in Full Dataset : 1164

Average sequence length: 275.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12770	D2W662_NAEGR_14_198	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12770	E6T9X0_SHEB6_1013_1270	99.7

Sequence based PCA Plot of the family - PF12770 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=229 Length=8
Motif2 Start=164 Length=8
Motif3 Start=123 Length=8
Motif4 Start=247 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay