3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12769

Details:

PFam ID : PF12769

PFam Domain Description : Domain of unknown function (DUF3814)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 375

Average sequence length: 87.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12769	D2W662_NAEGR_14_198	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12769	E9S8L8_RUMAL_7_60	98.6

Sequence based PCA Plot of the family - PF12769 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=8
Motif2 Start=3 Length=17
Motif3 Start=47 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay