3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12768

Details:

PFam ID : PF12768

PFam Domain Description : Cortical protein marker for cell polarity

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 78

Average sequence length: 236.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12768	D2W662_NAEGR_14_198	95.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12768	C4QWA3_PICPG_945_1235	100

Sequence based PCA Plot of the family - PF12768 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=180 Length=8
Motif3 Start=122 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay