3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12767

Details:

PFam ID : PF12767

PFam Domain Description : Transcriptional regulator of RNA polII, SAGA, subunit

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 169

Average sequence length: 209.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12767	E9HKB2_DAPPU_1_216	83.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12767	B6UFP1_MAIZE_24_332	99.4

Sequence based PCA Plot of the family - PF12767 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=258 Length=8
Motif3 Start=292 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay