3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12764

Details:

PFam ID : PF12764

PFam Domain Description : Glycine-rich region of argonaut

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 25

Average sequence length: 95.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12764	Q5GUT8_XANOR_67_181	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12764	D7TXS1_VITVI_64_179	100

Sequence based PCA Plot of the family - PF12764 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=21 Length=8
Motif3 Start=12 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay