3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12763

Details:

PFam ID : PF12763

PFam Domain Description : Cytoskeletal-regulatory complex EF hand

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 689

Average sequence length: 94.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12763	Q5GUT8_XANOR_67_181	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12763	D8LF73_ECTSI_274_382	100

Sequence based PCA Plot of the family - PF12763 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=77 Length=8
Motif2 Start=1 Length=8
Motif3 Start=44 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay