3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12762

Details:

PFam ID : PF12762

PFam Domain Description : ISXO2-like transposase domain

Number of Sequence in 50% Dataset : 185

Number of Sequence in Full Dataset : 513

Average sequence length: 126.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12762	Q5GUT8_XANOR_67_181	82.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12762	C6IGI6_9BACE_8_97	100

Sequence based PCA Plot of the family - PF12762 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=190 Length=8
Motif3 Start=127 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay