3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12761

Details:

PFam ID : PF12761

PFam Domain Description : Actin cytoskeleton-regulatory complex protein END3

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 51

Average sequence length: 175.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12761	END3_YARLI_195_393	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12761	END3_YARLI_195_393	100

Sequence based PCA Plot of the family - PF12761 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=183 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay