3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12760

Details:

PFam ID : PF12760

PFam Domain Description : Transposase zinc-ribbon domain

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 229

Average sequence length: 47.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12760	E0KBB6_RHIME_22_78	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12760	Q8PHL8_XANAC_22_70	99.1

Sequence based PCA Plot of the family - PF12760 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=15 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay