3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12756

Details:

PFam ID : PF12756

PFam Domain Description : C2H2 type zinc-finger (2 copies)

Number of Sequence in 50% Dataset : 234

Number of Sequence in Full Dataset : 684

Average sequence length: 77.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12756	Q10NR4_ORYSJ_117_215	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12756	B0WBH2_CULQU_347_445	98.6

Sequence based PCA Plot of the family - PF12756 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay