3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12755

Details:

PFam ID : PF12755

PFam Domain Description : Vacuolar 14 Fab1-binding region

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 115

Average sequence length: 93.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12755	Q10NR4_ORYSJ_117_215	73.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12755	B8BTE1_THAPS_506_608	100

Sequence based PCA Plot of the family - PF12755 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay