3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12750

Details:

PFam ID : PF12750

PFam Domain Description : Maff2 family

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 65

Average sequence length: 51.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12750	F0RKG2_DEIPM_1_135	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12750	D6DJL5_CLOSC_1_25	100

Sequence based PCA Plot of the family - PF12750 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay