3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12749

Details:

PFam ID : PF12749

PFam Domain Description : Eukaryotic metallothionein

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 11

Average sequence length: 58.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12749	F0RKG2_DEIPM_1_135	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12749	Q5K4A6_9BIVA_1_66	40

Sequence based PCA Plot of the family - PF12749 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=33 Length=8
Motif2 Start=21 Length=8
Motif3 Start=51 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay