3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12746

Details:

PFam ID : PF12746

PFam Domain Description : GNAT acetyltransferase

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 149

Average sequence length: 225.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12746	B1GE46_BACAN_1_48	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12746	B6G031_9CLOT_1_269	100

Sequence based PCA Plot of the family - PF12746 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=29 Length=11
Motif4 Start=57 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay