3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12745

Details:

PFam ID : PF12745

PFam Domain Description : Anticodon binding domain of tRNAs

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 82

Average sequence length: 223.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12745	A8Q0T7_MALGO_705_951	96.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12745	C5MFL8_CANTT_1436_1709	100

Sequence based PCA Plot of the family - PF12745 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=211 Length=8
Motif2 Start=280 Length=8
Motif3 Start=29 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay