3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12742

Details:

PFam ID : PF12742

PFam Domain Description : Gryzun, putative Golgi trafficking

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 8

Average sequence length: 51.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12742	B3JEP3_9BACE_9_59	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12742	A2EQW1_TRIVA_475_534	100

Sequence based PCA Plot of the family - PF12742 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay