3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12740

Details:

PFam ID : PF12740

PFam Domain Description : Chlorophyllase enzyme

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 54

Average sequence length: 207.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12740	E9CD19_9EUKA_59_319	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12740	C0PCL0_MAIZE_16_278	100

Sequence based PCA Plot of the family - PF12740 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=36 Length=8
Motif3 Start=100 Length=8
Motif4 Start=126 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay